The team is simplifying the process of collecting and analyzing DNA to conserve wildlife

The team is simplifying the process of collecting and analyzing DNA to conserve wildlife

Researchers report {that a} new methodology for acquiring DNA from elephant dung is quicker, cheaper and extra complete than earlier strategies. Pictured: African savannah elephants in Addo Elephant Nationwide Park in South Africa. Credit score: Rudi van Aarde

A brand new strategy to gathering DNA permits scientists to seize genetic info from wildlife with out disturbing the animals or placing their security in danger. Examined on elephant dung, the protocol yielded sufficient DNA to sequence the entire genome of not solely elephants but in addition their related microbes, crops, parasites and different organisms — at a fraction of the price of present strategies.

The researchers report their findings within the journal Frontiers in genetics.

Alida de Flaming, a postdoctoral researcher on the College of Illinois, Urbana-Champaign, who led the work with the U.S. First, Professor of Zoology Alfred Roca. “This enables us to evaluate wildlife populations with out having to throw, seize or immobilize the animals.”

Rocca mentioned gathering DNA from elephant dung is nothing new.

“the elephant stool samples It has been used for many years to review the genetics of elephants. “However this depends on very cumbersome strategies, typically involving chemical substances that may be harmful in some circumstances. The kits are cumbersome, tough to ship and have to be refrigerated, which makes the entire course of very costly.”

De Flamingh examined a comparatively cheap different: utilizing postcard-sized knowledge assortment playing cards that had been processed to forestall samples from deteriorating. Earlier analysis has proven that when samples are smeared onto cardstock, they are often saved for a number of months with out refrigeration.

The team is simplifying the process of collecting and analyzing DNA to conserve wildlife

Postcard-sized pattern assortment playing cards present an inexpensive different to extra refined strategies of gathering and storing genetic info in dung. The playing cards don’t have to be refrigerated and preserve viable DNA for months after they’re collected. Credit score: Fred Zwicky

The inspiration for the examine got here from de Vlaming’s work with the U.S. anthropology professor.

“Historical DNA may be problematic as a result of the samples degrade and should end in very low ranges of DNA for the goal species,” de Flamming mentioned. Acquiring genomic knowledge from dung can equally be tough, with decrease concentrations of elephant DNA than is on the market from blood samples. “I assumed this appeared like a superb alternative to check whether or not the identical methodologies might be utilized to non-invasive samples to generate the identical sort of information.”

The staff first collected samples from the zoo’s elephants in experiments designed to find out how lengthy after defecation they may produce dung. Genomic knowledge. The Jacksonville Zoo and Gardens in Florida and the Dallas Zoo allowed the staff to gather samples from African savannah elephants. The researchers retrieved the samples instantly after defecation and 24, 48 and 72 hours later.

Their checks revealed that even a three-day-old dung produced sufficient DNA for genetic research of elephants.

The team is simplifying the process of collecting and analyzing DNA to conserve wildlife

A child elephant from the savannah strolling with the herd. Credit score: Rudi van Aarde

The researchers then examined their strategy on samples collected from wild African savannah elephants. Research collaborator and co-author Rudi van Aarde, an emeritus professor of zoology and entomology on the College of Pretoria, South Africa, and colleagues used the playing cards to gather elephant dung samples after figuring out a geographically and ecologically numerous group of untamed areas throughout southern Africa.

by operating sequence knowledge The playing cards have been obtained by way of genetic databases, and the staff finds a treasure trove of data within the dung.

“I used to be shocked,” mentioned Roca. “I assumed we’d get some elephant DNA from the playing cards, however I used to be considering on the order of two%. Nonetheless, on common, greater than 12% of the DNA is attributed to the elephant.”

The researchers mentioned this was achieved with out utilizing laboratory strategies that focus on solely elephant DNA, which is an costly and time-consuming process. Consequently, every pattern supplied an unlimited quantity of information in regards to the elephant, the microbial composition of its intestine, its habitat and its weight-reduction plan. Researchers have even found the DNA of butterflies and different arthropods that work together with dung after it’s deposited.

“It is actually useful to get an concept of ​​every part there as a result of now you can begin asking questions, not simply in regards to the elephants’ genomes but in addition about issues like their well being and weight-reduction plan and whether or not there are pathogens or parasites,” de Flamming mentioned.

  • The team is simplifying the process of collecting and analyzing DNA to conserve wildlife

    A staff led by Yu of postdoctoral researcher Alida de Vlaming, left, and professor of animal sciences Alfred Rocca, developed a brand new, extra environment friendly methodology for acquiring DNA from wild animals with out disturbing the animals or endangering the researchers’ lives. Credit score: Fred Zwicky

  • The team is simplifying the process of collecting and analyzing DNA to conserve wildlife

    African savanna elephants. Credit score: Rudi van Aarde

With regards to elephant genomes, Roca mentioned, the outcomes are much like these obtained with blood samples.

“You may discover the interdependence of various elephant teams, the extent of genetic variety, the extent of inbreeding and the connection between elephants,” he mentioned. “And I might say there are loads of explanation why you would not wish to gather blood samples from wild elephants.”

“It is doable to do what you are able to do with blood, but it surely goes past that,” mentioned de Flaming. “Now you can do analyzes that you just could not do earlier than with blood DNA, which solely gives details about the elephant genome.”

de Flaming is a postdoctoral researcher and Malhey and Roca are professors on the Carl R. Woese of Genomic Biology on the College of Illinois.

extra info:
The mixture of non-invasive fecal DNA strategies allows complete genome and metagenome analyzes of wildlife biology, Frontiers in genetics (2023). DOI: 10.3389/fgene.2022.1021004

the quote: Group Simplifies DNA Assortment and Evaluation for Wildlife Conservation (2023, January 12), Retrieved January 12, 2023 from https://phys.org/information/2023-01-team-dna-analysis-wildlife.html

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